HoloFood Data Portal

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MGYG000313981

Details for MGYG000313981, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Faecimonas Bacteria > Firmicutes > Bacilli > RF39 > UBA660 > Faecimonas
Cluster representative

MGYG000310373

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000310373 on MGnify
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Annotations

MGYG000313981’s cluster representative genome MGYG000310373 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000310373 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000313981 Copy API Endpoint
Samples containing this genome

MGYG000313981’s cluster representative (MGYG000310373) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000310373’s sequence. Because MGYG000313981 has been clustered with MGYG000310373 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000313981.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000310373

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Containment Sample accession Animal accession Treatment
0.24 SAMEA10105037 Probiotic
0.23 SAMEA7571793 Prebiotic
0.23 SAMEA10104984 Control
0.23 SAMEA10104921 Prebiotic
0.23 SAMEA10104965 Prebiotic
0.23 SAMEA10159250 Probiotic
0.23 SAMEA7025235 Probiotic
0.22 SAMEA10105072 Prebiotic
0.22 SAMEA10145593 Control
0.22 SAMEA7571863 Probiotic