MGYG000313569

Taxonomy

Mediterraneibacter merdigallinarum Bacteria > Firmicutes_A > Clostridia > Lachnospirales > Lachnospiraceae > Mediterraneibacter > Mediterraneibacter merdigallinarum

Cluster representative

MGYG000310312

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000310312 on MGnify
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Annotations

MGYG000313569’s cluster representative genome MGYG000310312 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000310312 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000313569 Copy API Endpoint

MGYG000313569’s cluster representative (MGYG000310312) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000310312’s sequence. Because MGYG000313569 has been clustered with MGYG000310312 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000313569.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000310312

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Containment	Sample accession	Animal accession	Treatment
0.82	SAMEA10105025	SAMEA112904944	Prebiotic
0.82	SAMEA7697613	SAMEA112905262	Prebiotic
0.82	SAMEA9449945	SAMEA112904907	Prebiotic
0.82	SAMEA7571827	SAMEA112905382	Probiotic
0.82	SAMEA7571845	SAMEA112904735	Control
0.82	SAMEA9449857	SAMEA112905192	Prebiotic
0.82	SAMEA10104944	SAMEA112905178	Probiotic
0.82	SAMEA10105033	SAMEA112904789	Prebiotic
0.82	SAMEA9449830	SAMEA112904739	Control
0.81	SAMEA7571858	SAMEA112904840	Probiotic