HoloFood Data Portal

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MGYG000313508

Details for MGYG000313508, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Caccovivens Bacteria > Firmicutes_A > Clostridia > Christensenellales > UBA1242 > Caccovivens
Cluster representative

MGYG000313508

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000313508 on MGnify
 Show other genomes in cluster
Annotations

MGYG000313508’s cluster representative genome MGYG000313508 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000313508 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000313508 Copy API Endpoint
Samples containing this genome

MGYG000313508’s cluster representative (MGYG000313508) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000313508’s sequence. Because MGYG000313508 has been clustered with MGYG000313508 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000313508.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000313508

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Containment Sample accession Animal accession Treatment
0.85 SAMEA10145585 Control
0.85 SAMEA10104971 Probiotic
0.85 SAMEA7722473 Prebiotic
0.85 SAMEA10104937 Prebiotic
0.85 SAMEA7025239 Probiotic
0.84 SAMEA7025238 Probiotic
0.84 SAMEA7025274 Probiotic
0.84 SAMEA7571843 Prebiotic
0.83 SAMEA7697623 Probiotic
0.83 SAMEA7571873 Prebiotic