HoloFood Data Portal

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MGYG000313317

Details for MGYG000313317, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Coproplasma Bacteria > Firmicutes_A > Clostridia > Christensenellales > Borkfalkiaceae > Coproplasma
Cluster representative

MGYG000320615

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000320615 on MGnify
 Show other genomes in cluster
Annotations

MGYG000313317’s cluster representative genome MGYG000320615 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000320615 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000313317 Copy API Endpoint
Samples containing this genome

MGYG000313317’s cluster representative (MGYG000320615) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000320615’s sequence. Because MGYG000313317 has been clustered with MGYG000320615 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000313317.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000320615

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Containment Sample accession Animal accession Treatment
1.00 SAMEA7697608 Control
1.00 SAMEA10145587 Control
0.75 SAMEA10105022 Probiotic
0.70 SAMEA10105011 Prebiotic
0.69 SAMEA9449894 Probiotic
0.68 SAMEA7025248 Probiotic
0.68 SAMEA9449841 Probiotic
0.68 SAMEA10145583 Control
0.67 SAMEA9449916 Probiotic
0.67 SAMEA7025281 Probiotic