HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000313303

Details for MGYG000313303, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Agathobaculum stercoravium Bacteria > Firmicutes_A > Clostridia > Oscillospirales > Butyricicoccaceae > Agathobaculum > Agathobaculum stercoravium
Cluster representative

MGYG000313438

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000313438 on MGnify
 Show other genomes in cluster
Annotations

MGYG000313303’s cluster representative genome MGYG000313438 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000313438 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000313303 Copy API Endpoint
Samples containing this genome

MGYG000313303’s cluster representative (MGYG000313438) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000313438’s sequence. Because MGYG000313303 has been clustered with MGYG000313438 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000313303.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000313438

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Containment Sample accession Animal accession Treatment
0.22 SAMEA7025284 Control
0.22 SAMEA10105028 Probiotic
0.22 SAMEA7571771 Prebiotic
0.22 SAMEA10105061 Control
0.22 SAMEA10105003 Prebiotic
0.22 SAMEA10104951 Prebiotic
0.22 SAMEA10104914 Control
0.21 SAMEA10104974 Probiotic
0.21 SAMEA9449852 Prebiotic
0.21 SAMEA10105022 Probiotic