HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000312352

Details for MGYG000312352, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Butyricicoccus sp900604335 Bacteria > Firmicutes_A > Clostridia > Oscillospirales > Butyricicoccaceae > Butyricicoccus > Butyricicoccus sp900604335
Cluster representative

MGYG000316758

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000316758 on MGnify
 Show other genomes in cluster
Annotations

MGYG000312352’s cluster representative genome MGYG000316758 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000316758 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000312352 Copy API Endpoint
Samples containing this genome

MGYG000312352’s cluster representative (MGYG000316758) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000316758’s sequence. Because MGYG000312352 has been clustered with MGYG000316758 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000312352.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000316758

 Download all as TSV
Containment Sample accession Animal accession Treatment
1.00 SAMEA7571780 Control
1.00 SAMEA7571782 Prebiotic
1.00 SAMEA7025251 Control
1.00 SAMEA9449889 Probiotic
1.00 SAMEA14095989 Prebiotic
0.98 SAMEA7697603 Probiotic
0.98 SAMEA10104921 Prebiotic
0.97 SAMEA7025246 Probiotic
0.94 SAMEA10104959 Prebiotic
0.89 SAMEA10145562 Control