HoloFood Data Portal

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MGYG000312330

Details for MGYG000312330, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Fimicola cottocaccae Bacteria > Firmicutes_A > Clostridia > Lachnospirales > Anaerotignaceae > Fimicola > Fimicola cottocaccae
Cluster representative

MGYG000319158

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000319158 on MGnify
 Show other genomes in cluster
Annotations

MGYG000312330’s cluster representative genome MGYG000319158 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000319158 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000312330 Copy API Endpoint
Samples containing this genome

MGYG000312330’s cluster representative (MGYG000319158) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000319158’s sequence. Because MGYG000312330 has been clustered with MGYG000319158 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000312330.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000319158

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Containment Sample accession Animal accession Treatment
0.80 SAMEA10105046 Control
0.79 SAMEA9449873 Prebiotic
0.79 SAMEA7571791 Control
0.78 SAMEA7025246 Probiotic
0.78 SAMEA7571789 Probiotic
0.78 SAMEA10455477 Probiotic
0.78 SAMEA10145556 Control
0.77 SAMEA10105047 Control
0.76 SAMEA9449862 Prebiotic
0.76 SAMEA10145562 Control