HoloFood Data Portal

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MGYG000312204

Details for MGYG000312204, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Dysosmobacter Bacteria > Firmicutes_A > Clostridia > Oscillospirales > Oscillospiraceae > Dysosmobacter
Cluster representative

MGYG000316966

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000316966 on MGnify
 Show other genomes in cluster
Annotations

MGYG000312204’s cluster representative genome MGYG000316966 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000316966 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000312204 Copy API Endpoint
Samples containing this genome

MGYG000312204’s cluster representative (MGYG000316966) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000316966’s sequence. Because MGYG000312204 has been clustered with MGYG000316966 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000312204.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000316966

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Containment Sample accession Animal accession Treatment
1.00 SAMEA7697592 Control
0.97 SAMEA7025287 Prebiotic
0.97 SAMEA7571827 Probiotic
0.96 SAMEA14095989 Prebiotic
0.94 SAMEA10145601 Control
0.92 SAMEA7025251 Control
0.92 SAMEA7025283 Control
0.91 SAMEA7571793 Prebiotic
0.91 SAMEA10145562 Control
0.90 SAMEA10105016 Probiotic