HoloFood Data Portal

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MGYG000312038

Details for MGYG000312038, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
UBA11471 sp900542765 Bacteria > Bacteroidota > Bacteroidia > Bacteroidales > UBA11471 > UBA11471 > UBA11471 sp900542765
Cluster representative

MGYG000315739

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000315739 on MGnify
 Show other genomes in cluster
Annotations

MGYG000312038’s cluster representative genome MGYG000315739 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000315739 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000312038 Copy API Endpoint
Samples containing this genome

MGYG000312038’s cluster representative (MGYG000315739) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000315739’s sequence. Because MGYG000312038 has been clustered with MGYG000315739 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000312038.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000315739

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Containment Sample accession Animal accession Treatment
1.00 SAMEA7697608 Control
1.00 SAMEA9449918 Probiotic
1.00 SAMEA7025277 Control
1.00 SAMEA10105019 Control
1.00 SAMEA7571845 Control
1.00 SAMEA7571832 Control
1.00 SAMEA7571868 Prebiotic
1.00 SAMEA10105065 Prebiotic
1.00 SAMEA7571833 Prebiotic
1.00 SAMEA7025273 Prebiotic