HoloFood Data Portal

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MGYG000311954

Details for MGYG000311954, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Mailhella sp900555975 Bacteria > Desulfobacterota_I > Desulfovibrionia > Desulfovibrionales > Desulfovibrionaceae > Mailhella > Mailhella sp900555975
Cluster representative

MGYG000311954

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000311954 on MGnify
 Show other genomes in cluster
Annotations

MGYG000311954’s cluster representative genome MGYG000311954 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000311954 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000311954 Copy API Endpoint
Samples containing this genome

MGYG000311954’s cluster representative (MGYG000311954) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000311954’s sequence. Because MGYG000311954 has been clustered with MGYG000311954 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000311954.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000311954

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Containment Sample accession Animal accession Treatment
0.74 SAMEA10105022 Probiotic
0.74 SAMEA7697608 Control
0.73 SAMEA10105052 Control
0.73 SAMEA9449963 Probiotic
0.70 SAMEA10105017 Probiotic
0.70 SAMEA9449947 Prebiotic
0.69 SAMEA10145589 Control
0.69 SAMEA7571849 Prebiotic
0.68 SAMEA7571872 Prebiotic
0.67 SAMEA10105024 Control