HoloFood Data Portal

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MGYG000311950

Details for MGYG000311950, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Gallimonas sp900548845 Bacteria > Firmicutes_A > Clostridia > Christensenellales > Borkfalkiaceae > Gallimonas > Gallimonas sp900548845
Cluster representative

MGYG000311653

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000311653 on MGnify
 Show other genomes in cluster
Annotations

MGYG000311950’s cluster representative genome MGYG000311653 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000311653 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000311950 Copy API Endpoint
Samples containing this genome

MGYG000311950’s cluster representative (MGYG000311653) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000311653’s sequence. Because MGYG000311950 has been clustered with MGYG000311653 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000311950.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000311653

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Containment Sample accession Animal accession Treatment
0.94 SAMEA7025238 Probiotic
0.94 SAMEA7697592 Control
0.94 SAMEA7571775 Control
0.93 SAMEA7697583 Probiotic
0.93 SAMEA10145562 Control
0.91 SAMEA10104918 Probiotic
0.91 SAMEA10145564 Control
0.90 SAMEA10104929 Prebiotic
0.88 SAMEA7025236 Probiotic
0.88 SAMEA10145585 Control