HoloFood Data Portal

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MGYG000311947

Details for MGYG000311947, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Anaerotignum Bacteria > Firmicutes_A > Clostridia > Lachnospirales > Anaerotignaceae > Anaerotignum
Cluster representative

MGYG000320869

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000320869 on MGnify
 Show other genomes in cluster
Annotations

MGYG000311947’s cluster representative genome MGYG000320869 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000320869 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000311947 Copy API Endpoint
Samples containing this genome

MGYG000311947’s cluster representative (MGYG000320869) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000320869’s sequence. Because MGYG000311947 has been clustered with MGYG000320869 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000311947.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000320869

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Containment Sample accession Animal accession Treatment
0.44 SAMEA10145556 Control
0.44 SAMEA10104964 Control
0.42 SAMEA10104915 Control
0.39 SAMEA7571824 Probiotic
0.39 SAMEA9449862 Prebiotic
0.36 SAMEA9449916 Probiotic
0.35 SAMEA10104961 Probiotic
0.35 SAMEA10104977 Control
0.31 SAMEA7571863 Probiotic
0.31 SAMEA9449866 Probiotic