MGYG000311936

Taxonomy

Akkermansia muciniphila Bacteria > Verrucomicrobiota > Verrucomicrobiae > Verrucomicrobiales > Akkermansiaceae > Akkermansia > Akkermansia muciniphila

Cluster representative

MGYG000318664

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000318664 on MGnify
 Show other genomes in cluster

Annotations

MGYG000311936’s cluster representative genome MGYG000318664 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000318664 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000311936 Copy API Endpoint

MGYG000311936’s cluster representative (MGYG000318664) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000318664’s sequence. Because MGYG000311936 has been clustered with MGYG000318664 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000311936.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000318664

 Download all as TSV

Containment	Sample accession	Animal accession	Treatment
1.00	SAMEA7025286	SAMEA112904985	Prebiotic
1.00	SAMEA7571841	SAMEA112904773	Probiotic
1.00	SAMEA9449938	SAMEA112904995	Prebiotic
1.00	SAMEA10105052	SAMEA112905324	Control
1.00	SAMEA9449940	SAMEA112905148	Prebiotic
1.00	SAMEA7697623	SAMEA112905102	Probiotic
1.00	SAMEA7025273	SAMEA112904965	Prebiotic
1.00	SAMEA7697624	SAMEA112905336	Probiotic
1.00	SAMEA10105039	SAMEA112905019	Probiotic
1.00	SAMEA10105071	SAMEA112904878	Prebiotic