HoloFood Data Portal

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MGYG000311702

Details for MGYG000311702, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Ruminococcus_G avistercoris Bacteria > Firmicutes_A > Clostridia > Lachnospirales > Lachnospiraceae > Ruminococcus_G > Ruminococcus_G avistercoris
Cluster representative

MGYG000319360

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000319360 on MGnify
 Show other genomes in cluster
Annotations

MGYG000311702’s cluster representative genome MGYG000319360 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000319360 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000311702 Copy API Endpoint
Samples containing this genome

MGYG000311702’s cluster representative (MGYG000319360) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000319360’s sequence. Because MGYG000311702 has been clustered with MGYG000319360 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000311702.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000319360

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Containment Sample accession Animal accession Treatment
0.24 SAMEA10130121 Control
0.24 SAMEA9449958 Probiotic
0.23 SAMEA10145579 Control
0.23 SAMEA10104985 Control
0.23 SAMEA10105032 Control
0.22 SAMEA10159255 Probiotic
0.22 SAMEA10145586 Control
0.22 SAMEA7025235 Probiotic
0.22 SAMEA10130076 Prebiotic
0.22 SAMEA7025270 Probiotic