HoloFood Data Portal

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MGYG000311581

Details for MGYG000311581, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Rikenellaceae Bacteria > Bacteroidota > Bacteroidia > Bacteroidales > Rikenellaceae
Cluster representative

MGYG000309475

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000309475 on MGnify
 Show other genomes in cluster
Annotations

MGYG000311581’s cluster representative genome MGYG000309475 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000309475 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000311581 Copy API Endpoint
Samples containing this genome

MGYG000311581’s cluster representative (MGYG000309475) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000309475’s sequence. Because MGYG000311581 has been clustered with MGYG000309475 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000311581.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000309475

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Containment Sample accession Animal accession Treatment
1.00 SAMEA7025235 Probiotic
1.00 SAMEA10145562 Control
1.00 SAMEA7025247 Probiotic
1.00 SAMEA7722479 Prebiotic
1.00 SAMEA10104915 Control
1.00 SAMEA14099421 Control
1.00 SAMEA10105016 Probiotic
1.00 SAMEA7025242 Control
1.00 SAMEA10145564 Control
1.00 SAMEA9449865 Control