HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000311392

Details for MGYG000311392, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Butyricicoccus avicola Bacteria > Firmicutes_A > Clostridia > Oscillospirales > Butyricicoccaceae > Butyricicoccus > Butyricicoccus avicola
Cluster representative

MGYG000320013

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000320013 on MGnify
 Show other genomes in cluster
Annotations

MGYG000311392’s cluster representative genome MGYG000320013 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000320013 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000311392 Copy API Endpoint
Samples containing this genome

MGYG000311392’s cluster representative (MGYG000320013) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000320013’s sequence. Because MGYG000311392 has been clustered with MGYG000320013 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000311392.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000320013

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Containment Sample accession Animal accession Treatment
0.94 SAMEA9449865 Control
0.94 SAMEA10145595 Control
0.93 SAMEA7722473 Prebiotic
0.93 SAMEA9449854 Prebiotic
0.93 SAMEA7697620 Prebiotic
0.93 SAMEA10145560 Control
0.92 SAMEA9449954 Probiotic
0.92 SAMEA7025238 Probiotic
0.92 SAMEA7571849 Prebiotic
0.92 SAMEA14095991 Control