HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000311352

Details for MGYG000311352, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Fusicatenibacter sp900543115 Bacteria > Firmicutes_A > Clostridia > Lachnospirales > Lachnospiraceae > Fusicatenibacter > Fusicatenibacter sp900543115
Cluster representative

MGYG000320181

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000320181 on MGnify
 Show other genomes in cluster
Annotations

MGYG000311352’s cluster representative genome MGYG000320181 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000320181 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000311352 Copy API Endpoint
Samples containing this genome

MGYG000311352’s cluster representative (MGYG000320181) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000320181’s sequence. Because MGYG000311352 has been clustered with MGYG000320181 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000311352.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000320181

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Containment Sample accession Animal accession Treatment
0.24 SAMEA9449840 Probiotic
0.24 SAMEA7697596 Prebiotic
0.24 SAMEA10145593 Control
0.24 SAMEA10454442 Probiotic
0.24 SAMEA7571856 Probiotic
0.23 SAMEA7571831 Control
0.23 SAMEA7571769 Prebiotic
0.23 SAMEA10536118 Probiotic
0.23 SAMEA7697598 Control
0.22 SAMEA10105073 Prebiotic