HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000311345

Details for MGYG000311345, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
CAG-273 Bacteria > Firmicutes_A > Clostridia > TANB77 > CAG-508 > CAG-273
Cluster representative

MGYG000317058

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000317058 on MGnify
 Show other genomes in cluster
Annotations

MGYG000311345’s cluster representative genome MGYG000317058 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000317058 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000311345 Copy API Endpoint
Samples containing this genome

MGYG000311345’s cluster representative (MGYG000317058) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000317058’s sequence. Because MGYG000311345 has been clustered with MGYG000317058 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000311345.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000317058

 Download all as TSV
Containment Sample accession Animal accession Treatment
0.81 SAMEA7025254 Prebiotic
0.80 SAMEA7025238 Probiotic
0.80 SAMEA10105047 Control
0.80 SAMEA10455485 Control
0.80 SAMEA7025251 Control
0.80 SAMEA9449858 Probiotic
0.80 SAMEA9449890 Probiotic
0.79 SAMEA7571807 Probiotic
0.79 SAMEA7697612 Control
0.79 SAMEA7697600 Prebiotic