MGYG000311316

Taxonomy

Lachnoclostridium_A stercoravium Bacteria > Firmicutes_A > Clostridia > Lachnospirales > Lachnospiraceae > Lachnoclostridium_A > Lachnoclostridium_A stercoravium

Cluster representative

MGYG000315991

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000315991 on MGnify
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Annotations

MGYG000311316’s cluster representative genome MGYG000315991 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000315991 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000311316 Copy API Endpoint

MGYG000311316’s cluster representative (MGYG000315991) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000315991’s sequence. Because MGYG000311316 has been clustered with MGYG000315991 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000311316.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000315991

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Containment	Sample accession	Animal accession	Treatment
0.21	SAMEA7025280	SAMEA112905349	Probiotic
0.21	SAMEA10104938	SAMEA112904831	Prebiotic
0.21	SAMEA10455476	SAMEA112904798	Probiotic
0.21	SAMEA10159267	SAMEA112905062	Control
0.21	SAMEA7697626	SAMEA112905069	Probiotic
0.20	SAMEA9449841	SAMEA112904936	Probiotic
0.20	SAMEA7025270	SAMEA112904830	Probiotic