HoloFood Data Portal

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MGYG000311254

Details for MGYG000311254, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
SIG32 Bacteria > Cyanobacteria > Vampirovibrionia > Gastranaerophilales > Gastranaerophilaceae > SIG32
Cluster representative

MGYG000317880

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000317880 on MGnify
 Show other genomes in cluster
Annotations

MGYG000311254’s cluster representative genome MGYG000317880 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000317880 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000311254 Copy API Endpoint
Samples containing this genome

MGYG000311254’s cluster representative (MGYG000317880) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000317880’s sequence. Because MGYG000311254 has been clustered with MGYG000317880 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000311254.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000317880

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Containment Sample accession Animal accession Treatment
0.93 SAMEA7697630 Control
0.91 SAMEA10105056 Prebiotic
0.89 SAMEA9449951 Prebiotic
0.87 SAMEA7025287 Prebiotic
0.86 SAMEA10454448 Prebiotic
0.85 SAMEA7025270 Probiotic
0.84 SAMEA10105029 Probiotic
0.84 SAMEA14099425 Prebiotic
0.83 SAMEA10105047 Control
0.81 SAMEA9449916 Probiotic