HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000311221

Details for MGYG000311221, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Caccovivens Bacteria > Firmicutes_A > Clostridia > Christensenellales > UBA1242 > Caccovivens
Cluster representative

MGYG000319686

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000319686 on MGnify
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Annotations

MGYG000311221’s cluster representative genome MGYG000319686 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000319686 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000311221 Copy API Endpoint
Samples containing this genome

MGYG000311221’s cluster representative (MGYG000319686) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000319686’s sequence. Because MGYG000311221 has been clustered with MGYG000319686 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000311221.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000319686

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Containment Sample accession Animal accession Treatment
0.71 SAMEA7571848 Prebiotic
0.70 SAMEA10455485 Control
0.70 SAMEA7025234 Control
0.69 SAMEA9449849 Probiotic
0.69 SAMEA9449952 Probiotic
0.69 SAMEA10145560 Control
0.69 SAMEA10104914 Control
0.69 SAMEA7025280 Probiotic
0.69 SAMEA7571779 Prebiotic
0.68 SAMEA7025242 Control