HoloFood Data Portal

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MGYG000311170

Details for MGYG000311170, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Scatomonas merdigallinarum Bacteria > Firmicutes_A > Clostridia > Lachnospirales > Lachnospiraceae > Scatomonas > Scatomonas merdigallinarum
Cluster representative

MGYG000318392

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000318392 on MGnify
 Show other genomes in cluster
Annotations

MGYG000311170’s cluster representative genome MGYG000318392 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000318392 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000311170 Copy API Endpoint
Samples containing this genome

MGYG000311170’s cluster representative (MGYG000318392) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000318392’s sequence. Because MGYG000311170 has been clustered with MGYG000318392 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000311170.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000318392

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Containment Sample accession Animal accession Treatment
0.90 SAMEA7025285 Control
0.90 SAMEA7025283 Control
0.90 SAMEA10105047 Control
0.90 SAMEA7025281 Probiotic
0.90 SAMEA7025245 Probiotic
0.89 SAMEA7025238 Probiotic
0.89 SAMEA9449947 Prebiotic
0.88 SAMEA10145585 Control
0.88 SAMEA7025276 Control
0.88 SAMEA7571843 Prebiotic