HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000311060

Details for MGYG000311060, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Anaerobutyricum stercoris Bacteria > Firmicutes_A > Clostridia > Lachnospirales > Lachnospiraceae > Anaerobutyricum > Anaerobutyricum stercoris
Cluster representative

MGYG000309658

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000309658 on MGnify
 Show other genomes in cluster
Annotations

MGYG000311060’s cluster representative genome MGYG000309658 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000309658 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000311060 Copy API Endpoint
Samples containing this genome

MGYG000311060’s cluster representative (MGYG000309658) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000309658’s sequence. Because MGYG000311060 has been clustered with MGYG000309658 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000311060.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000309658

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Containment Sample accession Animal accession Treatment
0.71 SAMEA10104915 Control
0.71 SAMEA10104970 Probiotic
0.71 SAMEA10104950 Prebiotic
0.71 SAMEA10454438 Probiotic
0.71 SAMEA7025273 Prebiotic
0.70 SAMEA10145597 Control
0.70 SAMEA7697578 Control
0.70 SAMEA9449858 Probiotic
0.69 SAMEA9449922 Control
0.68 SAMEA7697596 Prebiotic