HoloFood Data Portal

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MGYG000310945

Details for MGYG000310945, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Limivivens merdigallinarum Bacteria > Firmicutes_A > Clostridia > Lachnospirales > Lachnospiraceae > Limivivens > Limivivens merdigallinarum
Cluster representative

MGYG000309939

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000309939 on MGnify
 Show other genomes in cluster
Annotations

MGYG000310945’s cluster representative genome MGYG000309939 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000309939 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000310945 Copy API Endpoint
Samples containing this genome

MGYG000310945’s cluster representative (MGYG000309939) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000309939’s sequence. Because MGYG000310945 has been clustered with MGYG000309939 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000310945.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000309939

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Containment Sample accession Animal accession Treatment
0.23 SAMEA9449894 Probiotic
0.22 SAMEA10104908 Control
0.22 SAMEA9449834 Probiotic
0.22 SAMEA7571782 Prebiotic
0.21 SAMEA7025268 Control
0.21 SAMEA7571791 Control
0.21 SAMEA7571868 Prebiotic
0.21 SAMEA7025256 Prebiotic
0.21 SAMEA10145595 Control
0.20 SAMEA7571804 Prebiotic