HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000310885

Details for MGYG000310885, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Gallimonas merdigallinarum Bacteria > Firmicutes_A > Clostridia > Christensenellales > Borkfalkiaceae > Gallimonas > Gallimonas merdigallinarum
Cluster representative

MGYG000316096

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000316096 on MGnify
 Show other genomes in cluster
Annotations

MGYG000310885’s cluster representative genome MGYG000316096 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000316096 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000310885 Copy API Endpoint
Samples containing this genome

MGYG000310885’s cluster representative (MGYG000316096) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000316096’s sequence. Because MGYG000310885 has been clustered with MGYG000316096 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000310885.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000316096

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Containment Sample accession Animal accession Treatment
0.25 SAMEA10145575 Control
0.25 SAMEA10454442 Probiotic
0.24 SAMEA10105016 Probiotic
0.24 SAMEA9449922 Control
0.24 SAMEA10455479 Prebiotic
0.24 SAMEA7697590 Control
0.24 SAMEA7697611 Prebiotic
0.24 SAMEA10104991 Prebiotic
0.24 SAMEA7697597 Probiotic
0.24 SAMEA9449860 Control