MGYG000310850

Taxonomy

Merdimonas faecis Bacteria > Firmicutes_A > Clostridia > Lachnospirales > Lachnospiraceae > Merdimonas > Merdimonas faecis

Cluster representative

MGYG000308317

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000308317 on MGnify
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Annotations

MGYG000310850’s cluster representative genome MGYG000308317 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000308317 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000310850 Copy API Endpoint

MGYG000310850’s cluster representative (MGYG000308317) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000308317’s sequence. Because MGYG000310850 has been clustered with MGYG000308317 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000310850.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000308317

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Containment	Sample accession	Animal accession	Treatment
0.22	SAMEA10454446	SAMEA112904864	Probiotic
0.22	SAMEA10159257	SAMEA112905376	Control
0.22	SAMEA10455488	SAMEA112905275	Prebiotic
0.22	SAMEA7697626	SAMEA112905069	Probiotic
0.22	SAMEA9449954	SAMEA112905379	Probiotic
0.21	SAMEA9449925	SAMEA112904993	Prebiotic
0.20	SAMEA9449912	SAMEA112904962	Probiotic
0.20	SAMEA10159256	SAMEA112904865	Probiotic
0.20	SAMEA10105008	SAMEA112905030	Control