HoloFood Data Portal

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MGYG000310716

Details for MGYG000310716, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Fimicola Bacteria > Firmicutes_A > Clostridia > Lachnospirales > Anaerotignaceae > Fimicola
Cluster representative

MGYG000319620

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000319620 on MGnify
 Show other genomes in cluster
Annotations

MGYG000310716’s cluster representative genome MGYG000319620 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000319620 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000310716 Copy API Endpoint
Samples containing this genome

MGYG000310716’s cluster representative (MGYG000319620) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000319620’s sequence. Because MGYG000310716 has been clustered with MGYG000319620 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000310716.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000319620

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Containment Sample accession Animal accession Treatment
0.23 SAMEA7025245 Probiotic
0.23 SAMEA10104926 Prebiotic
0.23 SAMEA7697634 Control
0.22 SAMEA7571768 Control
0.22 SAMEA10145560 Control
0.22 SAMEA9449863 Prebiotic
0.22 SAMEA10104967 Prebiotic
0.21 SAMEA10104991 Prebiotic
0.21 SAMEA7571822 Probiotic
0.21 SAMEA9449915 Probiotic