HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000310341

Details for MGYG000310341, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Pelethomonas intestinigallinarum Bacteria > Firmicutes_A > Clostridia > Oscillospirales > Oscillospiraceae > Pelethomonas > Pelethomonas intestinigallinarum
Cluster representative

MGYG000315591

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000315591 on MGnify
 Show other genomes in cluster
Annotations

MGYG000310341’s cluster representative genome MGYG000315591 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000315591 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000310341 Copy API Endpoint
Samples containing this genome

MGYG000310341’s cluster representative (MGYG000315591) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000315591’s sequence. Because MGYG000310341 has been clustered with MGYG000315591 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000310341.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000315591

 Download all as TSV
Containment Sample accession Animal accession Treatment
0.25 SAMEA10130121 Control
0.24 SAMEA7025252 Prebiotic
0.24 SAMEA10105038 Probiotic
0.24 SAMEA10159266 Control
0.24 SAMEA7025258 Probiotic
0.24 SAMEA9449961 Control
0.24 SAMEA7571766 Control
0.23 SAMEA7025264 Probiotic
0.23 SAMEA9449900 Control
0.23 SAMEA9449917 Probiotic