HoloFood Data Portal

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MGYG000310340

Details for MGYG000310340, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Caccomorpha excrementavium Bacteria > Firmicutes_A > Clostridia > Lachnospirales > Lachnospiraceae > Caccomorpha > Caccomorpha excrementavium
Cluster representative

MGYG000312197

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000312197 on MGnify
 Show other genomes in cluster
Annotations

MGYG000310340’s cluster representative genome MGYG000312197 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000312197 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000310340 Copy API Endpoint
Samples containing this genome

MGYG000310340’s cluster representative (MGYG000312197) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000312197’s sequence. Because MGYG000310340 has been clustered with MGYG000312197 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000310340.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000312197

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Containment Sample accession Animal accession Treatment
0.81 SAMEA9449860 Control
0.80 SAMEA7697583 Probiotic
0.80 SAMEA7025246 Probiotic
0.80 SAMEA10455477 Probiotic
0.78 SAMEA9449895 Probiotic
0.77 SAMEA10104929 Prebiotic
0.75 SAMEA7571801 Probiotic
0.75 SAMEA9449873 Prebiotic
0.74 SAMEA10104915 Control
0.73 SAMEA10455484 Prebiotic