HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000310227

Details for MGYG000310227, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Butyricimonas faecavium Bacteria > Bacteroidota > Bacteroidia > Bacteroidales > Marinifilaceae > Butyricimonas > Butyricimonas faecavium
Cluster representative

MGYG000314807

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000314807 on MGnify
 Show other genomes in cluster
Annotations

MGYG000310227’s cluster representative genome MGYG000314807 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000314807 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000310227 Copy API Endpoint
Samples containing this genome

MGYG000310227’s cluster representative (MGYG000314807) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000314807’s sequence. Because MGYG000310227 has been clustered with MGYG000314807 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000310227.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000314807

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Containment Sample accession Animal accession Treatment
0.78 SAMEA10105019 Control
0.78 SAMEA10105056 Prebiotic
0.76 SAMEA7697630 Control
0.76 SAMEA10105052 Control
0.76 SAMEA9449946 Prebiotic
0.75 SAMEA7697616 Probiotic
0.75 SAMEA10105060 Control
0.75 SAMEA7722479 Prebiotic
0.74 SAMEA7697618 Prebiotic
0.74 SAMEA10105039 Probiotic