HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000309776

Details for MGYG000309776, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Pseudobutyricicoccus lothianensis Bacteria > Firmicutes_A > Clostridia > Oscillospirales > Butyricicoccaceae > Pseudobutyricicoccus > Pseudobutyricicoccus lothianensis
Cluster representative

MGYG000307985

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000307985 on MGnify
 Show other genomes in cluster
Annotations

MGYG000309776’s cluster representative genome MGYG000307985 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000307985 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000309776 Copy API Endpoint
Samples containing this genome

MGYG000309776’s cluster representative (MGYG000307985) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000307985’s sequence. Because MGYG000309776 has been clustered with MGYG000307985 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000309776.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000307985

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Containment Sample accession Animal accession Treatment
0.31 SAMEA9449889 Probiotic
0.31 SAMEA9449955 Probiotic
0.31 SAMEA7571843 Prebiotic
0.31 SAMEA10105039 Probiotic
0.31 SAMEA10105024 Control
0.31 SAMEA10105065 Prebiotic
0.31 SAMEA10145597 Control
0.30 SAMEA10105008 Control
0.30 SAMEA9449874 Prebiotic
0.30 SAMEA10104921 Prebiotic