HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000309716

Details for MGYG000309716, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Faecimonas sp017886705 Bacteria > Firmicutes > Bacilli > RF39 > UBA660 > Faecimonas > Faecimonas sp017886705
Cluster representative

MGYG000320339

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000320339 on MGnify
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Annotations

MGYG000309716’s cluster representative genome MGYG000320339 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000320339 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000309716 Copy API Endpoint
Samples containing this genome

MGYG000309716’s cluster representative (MGYG000320339) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000320339’s sequence. Because MGYG000309716 has been clustered with MGYG000320339 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000309716.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000320339

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Containment Sample accession Animal accession Treatment
0.97 SAMEA10105012 Control
0.97 SAMEA10105030 Prebiotic
0.97 SAMEA9449892 Probiotic
0.97 SAMEA7571819 Probiotic
0.97 SAMEA7697633 Prebiotic
0.97 SAMEA7025241 Probiotic
0.96 SAMEA9449875 Prebiotic
0.96 SAMEA9449870 Prebiotic
0.96 SAMEA7722473 Prebiotic
0.96 SAMEA10104985 Control