HoloFood Data Portal

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MGYG000309618

Details for MGYG000309618, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Caccovivens Bacteria > Firmicutes_A > Clostridia > Christensenellales > UBA1242 > Caccovivens
Cluster representative

MGYG000313508

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000313508 on MGnify
 Show other genomes in cluster
Annotations

MGYG000309618’s cluster representative genome MGYG000313508 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000313508 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000309618 Copy API Endpoint
Samples containing this genome

MGYG000309618’s cluster representative (MGYG000313508) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000313508’s sequence. Because MGYG000309618 has been clustered with MGYG000313508 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000309618.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000313508

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Containment Sample accession Animal accession Treatment
0.40 SAMEA9449890 Probiotic
0.39 SAMEA7697608 Control
0.39 SAMEA7025270 Probiotic
0.38 SAMEA10159245 Prebiotic
0.37 SAMEA10105067 Prebiotic
0.36 SAMEA10104921 Prebiotic
0.36 SAMEA10159263 Prebiotic
0.36 SAMEA7571864 Probiotic
0.36 SAMEA10145576 Control
0.35 SAMEA7571844 Control