MGYG000309538

Taxonomy

Helicobacter_D pullorum Bacteria > Campylobacterota > Campylobacteria > Campylobacterales > Helicobacteraceae > Helicobacter_D > Helicobacter_D pullorum

Cluster representative

MGYG000315584

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000315584 on MGnify
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Annotations

MGYG000309538’s cluster representative genome MGYG000315584 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000315584 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000309538 Copy API Endpoint

MGYG000309538’s cluster representative (MGYG000315584) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000315584’s sequence. Because MGYG000309538 has been clustered with MGYG000315584 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000309538.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000315584

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Containment	Sample accession	Animal accession	Treatment
1.00	SAMEA10145601	SAMEA112905257	Control
1.00	SAMEA10145599	SAMEA112905287	Control
1.00	SAMEA7571825	SAMEA112905119	Probiotic
1.00	SAMEA10105022	SAMEA112905200	Probiotic
1.00	SAMEA7697603	SAMEA112904932	Probiotic
1.00	SAMEA7025289	SAMEA112905253	Control
1.00	SAMEA7025270	SAMEA112904830	Probiotic
1.00	SAMEA7571864	SAMEA112904748	Probiotic
1.00	SAMEA10105061	SAMEA112904863	Control
1.00	SAMEA7571872	SAMEA112905318	Prebiotic