HoloFood Data Portal

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MGYG000309529

Details for MGYG000309529, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Merdivicinus excrementipullorum Bacteria > Firmicutes_A > Clostridia > Oscillospirales > Ruminococcaceae > Merdivicinus > Merdivicinus excrementipullorum
Cluster representative

MGYG000313892

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000313892 on MGnify
 Show other genomes in cluster
Annotations

MGYG000309529’s cluster representative genome MGYG000313892 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000313892 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000309529 Copy API Endpoint
Samples containing this genome

MGYG000309529’s cluster representative (MGYG000313892) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000313892’s sequence. Because MGYG000309529 has been clustered with MGYG000313892 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000309529.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000313892

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Containment Sample accession Animal accession Treatment
0.87 SAMEA9449854 Prebiotic
0.86 SAMEA7571809 Control
0.86 SAMEA9449850 Control
0.86 SAMEA7571801 Probiotic
0.86 SAMEA14095991 Control
0.86 SAMEA7571779 Prebiotic
0.85 SAMEA9449865 Control
0.85 SAMEA9449833 Probiotic
0.85 SAMEA7571767 Control
0.84 SAMEA10145564 Control