MGYG000309522

Taxonomy

Mediterraneibacter avicola Bacteria > Firmicutes_A > Clostridia > Lachnospirales > Lachnospiraceae > Mediterraneibacter > Mediterraneibacter avicola

Cluster representative

MGYG000319122

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000319122 on MGnify
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Annotations

MGYG000309522’s cluster representative genome MGYG000319122 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000319122 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000309522 Copy API Endpoint

MGYG000309522’s cluster representative (MGYG000319122) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000319122’s sequence. Because MGYG000309522 has been clustered with MGYG000319122 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000309522.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000319122

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Containment	Sample accession	Animal accession	Treatment
0.99	SAMEA9449926	SAMEA112904943	Prebiotic
0.99	SAMEA10145583	SAMEA112904929	Control
0.99	SAMEA10145575	SAMEA112904841	Control
0.99	SAMEA7697596	SAMEA112905003	Prebiotic
0.99	SAMEA9449846	SAMEA112905166	Prebiotic
0.99	SAMEA7571778	SAMEA112905122	Control
0.99	SAMEA9449858	SAMEA112904981	Probiotic
0.98	SAMEA7697578	SAMEA112905016	Control
0.98	SAMEA7571804	SAMEA112904986	Prebiotic
0.97	SAMEA10104964	SAMEA112905009	Control