HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000309417

Details for MGYG000309417, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Fusicatenibacter sp900543115 Bacteria > Firmicutes_A > Clostridia > Lachnospirales > Lachnospiraceae > Fusicatenibacter > Fusicatenibacter sp900543115
Cluster representative

MGYG000320181

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000320181 on MGnify
 Show other genomes in cluster
Annotations

MGYG000309417’s cluster representative genome MGYG000320181 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000320181 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000309417 Copy API Endpoint
Samples containing this genome

MGYG000309417’s cluster representative (MGYG000320181) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000320181’s sequence. Because MGYG000309417 has been clustered with MGYG000320181 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000309417.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000320181

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Containment Sample accession Animal accession Treatment
0.88 SAMEA7025266 Probiotic
0.88 SAMEA7571835 Prebiotic
0.87 SAMEA7571821 Probiotic
0.87 SAMEA10145597 Control
0.87 SAMEA7025234 Control
0.87 SAMEA9449833 Probiotic
0.87 SAMEA10105037 Probiotic
0.87 SAMEA7571849 Prebiotic
0.87 SAMEA7025277 Control
0.87 SAMEA10104996 Prebiotic