HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000309390

Details for MGYG000309390, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Eubacterium_R faecale Bacteria > Firmicutes_A > Clostridia > Oscillospirales > Acutalibacteraceae > Eubacterium_R > Eubacterium_R faecale
Cluster representative

MGYG000309390

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000309390 on MGnify
 Show other genomes in cluster
Annotations

MGYG000309390’s cluster representative genome MGYG000309390 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000309390 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000309390 Copy API Endpoint
Samples containing this genome

MGYG000309390’s cluster representative (MGYG000309390) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000309390’s sequence. Because MGYG000309390 has been clustered with MGYG000309390 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000309390.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000309390

 Download all as TSV
Containment Sample accession Animal accession Treatment
0.34 SAMEA10104993 Prebiotic
0.34 SAMEA7571791 Control
0.34 SAMEA9449918 Probiotic
0.34 SAMEA10105073 Prebiotic
0.33 SAMEA9449963 Probiotic
0.33 SAMEA7025245 Probiotic
0.32 SAMEA10105005 Probiotic
0.32 SAMEA10455485 Control
0.31 SAMEA10105047 Control
0.31 SAMEA9449870 Prebiotic