HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000309289

Details for MGYG000309289, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Acutalibacter sp900755895 Bacteria > Firmicutes_A > Clostridia > Oscillospirales > Acutalibacteraceae > Acutalibacter > Acutalibacter sp900755895
Cluster representative

MGYG000320628

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000320628 on MGnify
 Show other genomes in cluster
Annotations

MGYG000309289’s cluster representative genome MGYG000320628 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000320628 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000309289 Copy API Endpoint
Samples containing this genome

MGYG000309289’s cluster representative (MGYG000320628) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000320628’s sequence. Because MGYG000309289 has been clustered with MGYG000320628 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000309289.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000320628

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Containment Sample accession Animal accession Treatment
0.22 SAMEA7571813 Prebiotic
0.21 SAMEA10455502 Probiotic
0.21 SAMEA7697584 Control
0.21 SAMEA7571797 Control
0.21 SAMEA7697623 Probiotic
0.21 SAMEA7697601 Prebiotic
0.21 SAMEA7571768 Control
0.21 SAMEA10104955 Control
0.21 SAMEA9449954 Probiotic
0.20 SAMEA10104937 Prebiotic