MGYG000309195

Taxonomy

Caccovivens Bacteria > Firmicutes_A > Clostridia > Christensenellales > UBA1242 > Caccovivens

Cluster representative

MGYG000312144

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000312144 on MGnify
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Annotations

MGYG000309195’s cluster representative genome MGYG000312144 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000312144 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000309195 Copy API Endpoint

MGYG000309195’s cluster representative (MGYG000312144) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000312144’s sequence. Because MGYG000309195 has been clustered with MGYG000312144 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000309195.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000312144

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Containment	Sample accession	Animal accession	Treatment
1.00	SAMEA9449916	SAMEA112905127	Probiotic
1.00	SAMEA9449920	SAMEA112904974	Probiotic
1.00	SAMEA7025275	SAMEA112905332	Probiotic
1.00	SAMEA9449846	SAMEA112905166	Prebiotic
0.99	SAMEA14409936	SAMEA112904743	Control
0.99	SAMEA7025238	SAMEA112905325	Probiotic
0.96	SAMEA7571824	SAMEA112905082	Probiotic
0.95	SAMEA7025248	SAMEA112905319	Probiotic
0.93	SAMEA7697576	SAMEA112904922	Prebiotic
0.91	SAMEA7025240	SAMEA112904911	Probiotic