HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000309173

Details for MGYG000309173, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Ventrisoma faecale Bacteria > Firmicutes_A > Clostridia > Lachnospirales > Lachnospiraceae > Ventrisoma > Ventrisoma faecale
Cluster representative

MGYG000318167

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000318167 on MGnify
 Show other genomes in cluster
Annotations

MGYG000309173’s cluster representative genome MGYG000318167 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000318167 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000309173 Copy API Endpoint
Samples containing this genome

MGYG000309173’s cluster representative (MGYG000318167) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000318167’s sequence. Because MGYG000309173 has been clustered with MGYG000318167 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000309173.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000318167

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Containment Sample accession Animal accession Treatment
0.50 SAMEA10104955 Control
0.50 SAMEA10104981 Probiotic
0.50 SAMEA10145595 Control
0.49 SAMEA10105043 Control
0.49 SAMEA10104978 Control
0.49 SAMEA10159263 Prebiotic
0.48 SAMEA10145601 Control
0.48 SAMEA9449841 Probiotic
0.48 SAMEA9449946 Prebiotic
0.47 SAMEA9449895 Probiotic