HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000309047

Details for MGYG000309047, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Heteroscilispira lomanii Bacteria > Firmicutes_A > Clostridia > Oscillospirales > Oscillospiraceae > Heteroscilispira > Heteroscilispira lomanii
Cluster representative

MGYG000313860

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000313860 on MGnify
 Show other genomes in cluster
Annotations

MGYG000309047’s cluster representative genome MGYG000313860 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000313860 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000309047 Copy API Endpoint
Samples containing this genome

MGYG000309047’s cluster representative (MGYG000313860) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000313860’s sequence. Because MGYG000309047 has been clustered with MGYG000313860 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000309047.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000313860

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Containment Sample accession Animal accession Treatment
0.91 SAMEA7025277 Control
0.91 SAMEA10104961 Probiotic
0.90 SAMEA10454449 Prebiotic
0.89 SAMEA7697584 Control
0.89 SAMEA9449907 Prebiotic
0.88 SAMEA7722473 Prebiotic
0.88 SAMEA10104941 Probiotic
0.88 SAMEA7025251 Control
0.88 SAMEA9449950 Prebiotic
0.87 SAMEA7697623 Probiotic