HoloFood Data Portal

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MGYG000308999

Details for MGYG000308999, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Negativibacillus faecipullorum Bacteria > Firmicutes_A > Clostridia > Oscillospirales > Ruminococcaceae > Negativibacillus > Negativibacillus faecipullorum
Cluster representative

MGYG000308854

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000308854 on MGnify
 Show other genomes in cluster
Annotations

MGYG000308999’s cluster representative genome MGYG000308854 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000308854 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308999 Copy API Endpoint
Samples containing this genome

MGYG000308999’s cluster representative (MGYG000308854) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000308854’s sequence. Because MGYG000308999 has been clustered with MGYG000308854 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308999.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000308854

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Containment Sample accession Animal accession Treatment
0.97 SAMEA14099424 Prebiotic
0.97 SAMEA7571812 Control
0.97 SAMEA7697613 Prebiotic
0.97 SAMEA7571872 Prebiotic
0.96 SAMEA7025239 Probiotic
0.96 SAMEA7571767 Control
0.96 SAMEA10104915 Control
0.96 SAMEA7571848 Prebiotic
0.96 SAMEA9449916 Probiotic
0.96 SAMEA7025238 Probiotic