HoloFood Data Portal

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MGYG000308944

Details for MGYG000308944, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
RGIG4074 Bacteria > Firmicutes_A > Clostridia > Christensenellales > Borkfalkiaceae > RGIG4074
Cluster representative

MGYG000308944

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000308944 on MGnify
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Annotations

MGYG000308944’s cluster representative genome MGYG000308944 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000308944 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308944 Copy API Endpoint
Samples containing this genome

MGYG000308944’s cluster representative (MGYG000308944) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000308944’s sequence. Because MGYG000308944 has been clustered with MGYG000308944 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308944.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000308944

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Containment Sample accession Animal accession Treatment
1.00 SAMEA7025249 Prebiotic
0.98 SAMEA7025240 Probiotic
0.85 SAMEA9449879 Probiotic
0.79 SAMEA14099421 Control
0.62 SAMEA10455483 Prebiotic
0.58 SAMEA10455484 Prebiotic
0.34 SAMEA7025241 Probiotic
0.32 SAMEA9449833 Probiotic
0.27 SAMEA7571806 Control
0.26 SAMEA10455477 Probiotic