HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000308940

Details for MGYG000308940, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Onthoplasma Bacteria > Firmicutes_A > Clostridia > Christensenellales > UBA1242 > Onthoplasma
Cluster representative

MGYG000310747

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000310747 on MGnify
 Show other genomes in cluster
Annotations

MGYG000308940’s cluster representative genome MGYG000310747 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000310747 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308940 Copy API Endpoint
Samples containing this genome

MGYG000308940’s cluster representative (MGYG000310747) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000310747’s sequence. Because MGYG000308940 has been clustered with MGYG000310747 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308940.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000310747

 Download all as TSV
Containment Sample accession Animal accession Treatment
0.61 SAMEA10454438 Probiotic
0.58 SAMEA10130088 Prebiotic
0.57 SAMEA9449873 Prebiotic
0.48 SAMEA10159244 Probiotic
0.42 SAMEA7722476 Control
0.40 SAMEA10145568 Control
0.38 SAMEA10145564 Control
0.38 SAMEA14099424 Prebiotic
0.37 SAMEA14095989 Prebiotic
0.34 SAMEA9449878 Control