HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000308938

Details for MGYG000308938, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Coprosoma intestinipullorum Bacteria > Firmicutes > Bacilli > RF39 > UBA660 > Coprosoma > Coprosoma intestinipullorum
Cluster representative

MGYG000313511

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000313511 on MGnify
 Show other genomes in cluster
Annotations

MGYG000308938’s cluster representative genome MGYG000313511 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000313511 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308938 Copy API Endpoint
Samples containing this genome

MGYG000308938’s cluster representative (MGYG000313511) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000313511’s sequence. Because MGYG000308938 has been clustered with MGYG000313511 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308938.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000313511

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Containment Sample accession Animal accession Treatment
0.85 SAMEA7025270 Probiotic
0.84 SAMEA10159244 Probiotic
0.84 SAMEA9449840 Probiotic
0.84 SAMEA7697592 Control
0.84 SAMEA10104964 Control
0.84 SAMEA10104978 Control
0.84 SAMEA7025251 Control
0.84 SAMEA9449923 Probiotic
0.83 SAMEA9449963 Probiotic
0.83 SAMEA10104941 Probiotic