HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000308931

Details for MGYG000308931, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Thermophilibacter excrementavium Bacteria > Actinobacteriota > Coriobacteriia > Coriobacteriales > Atopobiaceae > Thermophilibacter > Thermophilibacter excrementavium
Cluster representative

MGYG000308057

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000308057 on MGnify
 Show other genomes in cluster
Annotations

MGYG000308931’s cluster representative genome MGYG000308057 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000308057 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308931 Copy API Endpoint
Samples containing this genome

MGYG000308931’s cluster representative (MGYG000308057) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000308057’s sequence. Because MGYG000308931 has been clustered with MGYG000308057 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308931.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000308057

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Containment Sample accession Animal accession Treatment
0.65 SAMEA9449937 Probiotic
0.62 SAMEA7571843 Prebiotic
0.61 SAMEA14409936 Control
0.61 SAMEA7025275 Probiotic
0.61 SAMEA9449941 Prebiotic
0.60 SAMEA10105030 Prebiotic
0.60 SAMEA10105029 Probiotic
0.48 SAMEA10130088 Prebiotic
0.47 SAMEA10145589 Control
0.47 SAMEA7697618 Prebiotic