HoloFood Data Portal

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MGYG000308922

Details for MGYG000308922, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Choladocola Bacteria > Firmicutes_A > Clostridia > Lachnospirales > Lachnospiraceae > Choladocola
Cluster representative

MGYG000319712

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000319712 on MGnify
 Show other genomes in cluster
Annotations

MGYG000308922’s cluster representative genome MGYG000319712 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000319712 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308922 Copy API Endpoint
Samples containing this genome

MGYG000308922’s cluster representative (MGYG000319712) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000319712’s sequence. Because MGYG000308922 has been clustered with MGYG000319712 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308922.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000319712

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Containment Sample accession Animal accession Treatment
0.24 SAMEA7571808 Control
0.23 SAMEA10454444 Probiotic
0.23 SAMEA7571832 Control
0.23 SAMEA7571804 Prebiotic
0.23 SAMEA7025251 Control
0.23 SAMEA9449958 Probiotic
0.23 SAMEA9449926 Prebiotic
0.22 SAMEA7697599 Control
0.21 SAMEA7571788 Control
0.21 SAMEA10455486 Control