HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000308889

Details for MGYG000308889, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Caccovivens Bacteria > Firmicutes_A > Clostridia > Christensenellales > UBA1242 > Caccovivens
Cluster representative

MGYG000313182

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000313182 on MGnify
 Show other genomes in cluster
Annotations

MGYG000308889’s cluster representative genome MGYG000313182 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000313182 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308889 Copy API Endpoint
Samples containing this genome

MGYG000308889’s cluster representative (MGYG000313182) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000313182’s sequence. Because MGYG000308889 has been clustered with MGYG000313182 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308889.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000313182

 Download all as TSV
Containment Sample accession Animal accession Treatment
0.36 SAMEA10104951 Prebiotic
0.34 SAMEA10145564 Control
0.34 SAMEA9449864 Control
0.33 SAMEA7697613 Prebiotic
0.33 SAMEA9449940 Prebiotic
0.32 SAMEA10145570 Control
0.31 SAMEA10454448 Prebiotic
0.31 SAMEA10159267 Control
0.31 SAMEA7025285 Control
0.30 SAMEA7571827 Probiotic