HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000308870

Details for MGYG000308870, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Lactobacillus gallinarum Bacteria > Firmicutes > Bacilli > Lactobacillales > Lactobacillaceae > Lactobacillus > Lactobacillus gallinarum
Cluster representative

MGYG000314949

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000314949 on MGnify
 Show other genomes in cluster
Annotations

MGYG000308870’s cluster representative genome MGYG000314949 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000314949 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308870 Copy API Endpoint
Samples containing this genome

MGYG000308870’s cluster representative (MGYG000314949) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000314949’s sequence. Because MGYG000308870 has been clustered with MGYG000314949 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308870.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000314949

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Containment Sample accession Animal accession Treatment
0.21 SAMEA7571770 Probiotic
0.21 SAMEA10130092 Prebiotic
0.21 SAMEA9449896 Prebiotic
0.21 SAMEA7722473 Prebiotic
0.21 SAMEA7571809 Control
0.20 SAMEA7025279 Probiotic
0.20 SAMEA9449855 Probiotic
0.20 SAMEA10104922 Prebiotic
0.20 SAMEA10130034 Prebiotic
0.20 SAMEA10159266 Control